Scaffold Ga0335080_10599589

Overview

Basic Information

• Taxon OID: 3300032828
• Scaffold ID: Ga0335080_10599589
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1158
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005523	Metagenome / Metatranscriptome	398	Y
F102872	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_105995891	F005523	N/A	CFVAAVLTFFIAGLLYRLCFEHVDNLGAYSIPSETGLLISSGFVS
Ga0335080_105995892	F102872	GAG	MTRSTLFSKVLFAFIALVLALPLFWFAGGIRWLDTKVFPPRRPKDMPPNAVWIDAPALPISWHHGWWFGCDTPLSGRANYCRLVMADGSEVYEGEYLPCENGAPVAMSKIDLVPPPDQVGMWIADKRLKELAPIGALRKGDLLVPVAVLDRCDELKPKRRVN