NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10235249

Scaffold Ga0335080_10235249


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10235249 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2005
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017708Metagenome239Y
F046588Metagenome / Metatranscriptome151Y
F105941Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_102352492F105941GGAGGMWKITTRGFTLQEVLLMVVMNVTYATDEGEQRSGKDPRTETHQDPGDCHGKSN
Ga0335080_102352493F017708AGGAGMAKVIEFYIPKNFRKPLSTVPQQQLGKIIEFCPQTKRSA
Ga0335080_102352494F046588GAGMTYIPTQTGFMRLEDSKKLLQAIFPNYPSLVPCHSAPHLEPTPQGSKDYGNEERMSLC

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