Scaffold Ga0335080_10000109

Overview

Basic Information

• Taxon OID: 3300032828
• Scaffold ID: Ga0335080_10000109
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70615
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (74.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007764	Metagenome / Metatranscriptome	345	Y
F037751	Metagenome / Metatranscriptome	167	Y
F044641	Metagenome / Metatranscriptome	154	Y
F058377	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_1000010919	F037751	AGG	MRNQYLLICVVFLTLAAAAQDWEACKPEGDYSFNDLKAAVRRVTSSGMWSGWDTKTFNRSGDLVATAILKTLDDSQMASREHAREILMMLRNAFECPQVCVKVTDDRRPRMTLLLLKHLNEITGGKIKSDIDEVKQYVLQQSVK
Ga0335080_1000010921	F007764	N/A	MPVTIEAQNTGDANLQKELVARIEHIFADRSGDWRVVILGSKASDRWDMRITGPNAFERSYTLEGAMGQHEAPTVAAIIAKMLPGRV
Ga0335080_1000010930	F044641	N/A	MSRWTVKAPTLCILSCLVFIMLLIVVLPDVDLPDTAFHQGTAPLVVHARARTAPAIVAVATLFQLPTIARAWHHDRDLELIAANFEPNFRPILLCSIRR
Ga0335080_1000010931	F058377	AGGAG	MSFYRSESVEYGHLLQEAAARTGFSAHEMQELLESELSIDHLLTYITAVVSDRMN