Scaffold Ga0310342_100957461

Overview

Basic Information

• Taxon OID: 3300032820
• Scaffold ID: Ga0310342_100957461
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8644
  • Long. (^o): -158.9436
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028194	Metagenome	192	Y
F040136	Metagenome / Metatranscriptome	162	Y
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1009574612	F040136	N/A	MEARSAIGDGIKDGTREVESVTSMDEIRPRGKWSDSELNQVKFLHAYNSTSQIAKIFGTTKNAIIGALYRDKVGNGYVPSEDSKYTGPKNL
Ga0310342_1009574613	F042929	AGAAGG	MMGVWDPGEEKTVLSQIKKAIGARYQALKGWGGMILPGILIGFYFFIFFLLLSGCAYFKKEKKDEIIITDLPPIEFICTKIDCGDEDIDKLVADEQNTIACIKLQPECKVDEQN
Ga0310342_1009574614	F028194	N/A	KELQKQHDDLLVKINQGKEAIRSMEANLIILQGAIQQCNWTLKLFKKEKNK