Scaffold Ga0310342

Basic Information
Taxon OID	3300032820 Open in IMG/M
Scaffold ID	Ga0310342_100071389 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032820 Open in IMG/M

Scaffold ID

Ga0310342_100071389 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3069
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3069

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.8644	Long. (^o)	-158.9436	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.8644

Long. (^o)

-158.9436

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F010690	Metagenome / Metatranscriptome	300	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1000713891	F010690	N/A	YLDSFSVDLLPKRLIVPPVQAGLGTLINIVAPILEAYECNTGLAEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGIWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQG
Ga0310342_1000713892	F002100	AGGAG	LSQIPRSSFSPALIKPTYNVGDYGHDVIIPLNCLSGSTVTLVPSTSTFVQVLEDGRVPVDEVNQFITNSDEMAGVHAGDSTDFDTTWEWLPDMSFNAYKASFSLAVFMNISAYTSGNFAISSVQVTMKVIGGGEGDQVIVDKIINPGMANMTSAVSQIAILNVDTKTSAKIPDKPVSIQVKVNTSSGTGTYQCGIVPLFCYFGAAVPKTWTTSSVIVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0310342_1000713893	F025299	AGGAG	MIIEEIPFFVEFVILGIVLGFGYGFTKLFLSHAKDKSRIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMFGKPILKKVLNVVDKFGV
Ga0310342_1000713894	F002150	N/A	MVSVAVPAMLATKASKKSGQILQEQFGYNFIDLITKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQQTYSATPTAPGKFNPPGWDKPYDYGTPEHQQAEPHLFPEKEQQFKFWDLINAIAIFYISWEAYKYWKRGGNDFLTLGIFGLLIAVLSVLSFSRFLNKFSLNRFQEANK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310342_100071389

Overview

Ecosystem & Geography

Associated Families

Sequences