NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_11965218

Scaffold Ga0335078_11965218


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_11965218 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)628
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031712Metagenome / Metatranscriptome182Y
F058323Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_119652181F058323N/AVIELHWTRDQVLDQIDVPFLEDLHRAWSDFPPLRRLAAAYVGHRPRARASRNYHELLAMFPGGAIR
Ga0335078_119652182F031712N/APGARAVRLAGRDFQVAPLSLRQILAIADHVPKLSAISVDTMSGERLTPLAEVVWHGLRRAHPTLSREEFFDLPITIGELVTALPVVIEQAGGRRLEGADGGAPPGEIPAASASTASIGARSSPTS

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