Scaffold Ga0335078_10128404

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10128404
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3617
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010204	Metagenome / Metatranscriptome	307	Y
F018587	Metagenome / Metatranscriptome	234	Y
F021193	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_101284042	F010204	AGGAGG	MPSSWEQKGVLGPIYRLAGDGLNDEGIALQLGLTEVKVRGCVAWIVRFLELKNRQELVLYASTAA
Ga0335078_101284043	F018587	GGAG	MDTVLRPVIVRARSLRAFIAASVRKMLRMEPHDGDFASQRVCPFCGRITPRYETCCLECGKALKAT
Ga0335078_101284047	F021193	AGG	MNPNGNLEKILESAVVISWADLTRGTPTGLIHIEYGFVTGGTLDYLKVWSSVTRGHWLLACQYWMSANTVHSAGVGF