NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10104356

Scaffold Ga0335078_10104356


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10104356 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4086
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038963Metagenome164Y
F040432Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_101043563F040432AGGAMDENWPLFTASIAGRAPTAHEAQLLDASRRLWPAALAAVKKETSDQPGLPLDPKSIATECWEKSLFSARGTMNKLGTANISNLDSYLFGIFSHRLRRYLAEEHKKRQAIEFVPDTEALINVAGAKDLSAAEKLESRIALREALERSDEWFEEMAVCYLVDMSWKDIGRLFGLTKEKARKRFEYGIRKLRKSLQKPSDPASDPKGSRSKG
Ga0335078_101043565F038963GAGMVNNPKERIRRPSKAEARFSEIARREADRQARRIHWQRLLEARQQYIEGNAFGLWARAIAEAEGQVPVWLGKVIEERCPGIFGPDRISETAHQHPPLNRQILNWVESSLLAQAKREGWLRAVTYYAVRDPAFARDCVYSQHCRVQWKRRRPSAYPSFDEWRRASEQCPDEIFDAVEIPEHKRQIIKVPRNVGPGRFATAVAEYMEWEAFTYWLRSLLESDAKFPDAVTKELQRRCPGFLECDEVMRSTLSPENYTRRWKALLEWGENRFFNNIEKEGWFGAVVSEARAHPRSARTVDYWVFYWDEHWAGHTLDVYPSFQEWRRVADEFVAAAVGERAVAV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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