NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10020863

Scaffold Ga0335078_10020863


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10020863 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9743
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019267Metagenome / Metatranscriptome230Y
F022798Metagenome212Y
F048047Metagenome148Y
F083584Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1002086310F019267GGAGGMPASATYTTLYTFRLDRRQLVRRIRVDVTGLTSGANTIPHGIVAPNNPSVGQAPKDEIALLTSNVAAHRTQAADATNLYYTVDSGSGTTISVYVTV
Ga0335078_1002086314F083584N/ADSGKISRSAWRRAKDAEQRVQNAFNRGQITPAMMATGAPLRLALSDGPAFKALIEDRPALVRANSIIGIGGSGSETGESPRQLFSRLVEEKKRELMLSDQRLGELDAHRKAGALVAKENPDLLKNYRADAKSA
Ga0335078_100208636F048047GAGGMRDDVIAKPEDFRRAVERANVERVELPSGLAVLLCRPPVFAALGLGQTGTRLQAKITDAKPDEVRTEDIEEFTHWITGTLTRLFVQPRFSATPGDAEIGLGDILIEDLKFIFRWLRGEVFGTGTEDLGLGAGENPSTQSPASSPCTEDLGRFPGGQGTNPLPGGSGTAHALPSQPTAGAHRHAGLSAGLHRG
Ga0335078_100208639F022798GAGGMSYTTITQVAGMFPTFTRNGSKGPADTLIQNYIDDVAGEIDAILQRRFQEAYSSLGFPAWQGAFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKSFEDEFRELCNKLNARDANGKPLAEGGDYDFLFDPSAKVETPRPQLGGVAGGDQYPSGTSNEASTNVFKKWDRREF
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