Scaffold Ga0335078_10013979

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10013979
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11895
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034793	Metagenome	173	Y
F043193	Metagenome	156	Y
F057048	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1001397912	F057048	AGGAG	MPNLTSAAPFTYRDASGTRHRVVVHKRADDAWQVLDIAVIQTLTGDGEGRDAAEALARDYAQQQQQHHPAARAGRRAGRRRAAA
Ga0335078_1001397914	F043193	GGAG	MLTLTPDTAVIPQPVRALGVANTRRTAAAALKTRLRRREISLREILENPPEELERQMTWEVLLWTPGIGRTRLRALNVRAIRDGHVNLAAPLGALTERQRNWLAARLCR
Ga0335078_100139794	F034793	AGGAGG	VTTENRSTALSGAHHPDDELPPRRRARAGIARTLRTIIRLACCWRRMAHVPSLGQVRAMAWFDGREPCSYLLDRKVNFVPEPMEFGYERELGRHALCFTCRDPYGRTMELVTMRDGGGFDLLGGF