NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10001454

Scaffold Ga0335078_10001454


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10001454 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35726
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (63.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000348Metagenome / Metatranscriptome1250Y
F001343Metagenome / Metatranscriptome719Y
F030195Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000145417F030195GGAGMTGSGLFGWRFKSKTPLWFKLVVGLLLTDSALHFGLLFTVSSWALPSPDALHSHRVPFRDGGIYFVASWLGWYLDAKWIGAALLAILVVLLVLNRDQLERGF
Ga0335078_1000145424F001343AGGAGMKFATVSKSVVMGLAVLLASSAFAATKANLHLSGTTMISGTKLKAGDYKLEWDGTGPSVEVSIVQGKNVVAKVPAKVVDLSAPSQGDAAVVQTNNDGSSTLTSARFGGKKYALDLGAASDGMQSGSSK
Ga0335078_100014547F000348GGAVALKKALLILAAVVLAPVLVVSLVVLAAGDWRPIGQTDAGDKISVSSVRILKSNQRTALVRVEYKEPPELPRGGPFVEMRARVRFNCANGVAIPSTEWFYTRDHSGRSVVSKKATHDDQFGKGPEGGFADLVSKSVCSQSR

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