Scaffold Ga0335078_10000654

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000654
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53082
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (82.35%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039236	Metagenome	164	N
F066222	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1000065422	F039236	AGGAG	MTKVPADAPATALSPYLSLRQAVRPAIITYTVLANEQERAGALAQEAGQLLEATRDLLEAVGLVHLLSPKPGEEMQGDDRGDRQARLLAAYADAGILWAKVLGNAIALADRLLVRSRWDDVLRLADFLDNAGETVVGQSLRGRANDAIRSDYYARINCIHDKMSREETAAAIDTLRSLPSGFPERKLEIALRLRPLGTSVKSVTKPDRQSRNTIDSAMTSLPESADYYLAVLSDIFYSLV
Ga0335078_1000065423	F066222	AGGA	VSEVNVSDIEALAAFRSHLIEFNKNLEESFSIMRTHWRELANIWRDDMYRRFGEALEEVTPGIEKYLEATQGHEAYLVALVERLRSVRELSAG