Scaffold Ga0335078_10000191

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000191
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101848
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (71.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001399	Metagenome / Metatranscriptome	705	Y
F019706	Metagenome / Metatranscriptome	228	Y
F022516	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1000019116	F001399	N/A	MKLNESVTTYDIAEALQGESGKFEVTSPNGEGYFVTCHPGHSIVSIEWAGNEPNLQPFLVRKVAQPVGTLEGRNKRSAAA
Ga0335078_1000019138	F022516	N/A	MIWWFLILALSAGAVLWAGMAAYLRVRRHMTPGAGARKGSEREADNL
Ga0335078_100001917	F019706	N/A	MTTSVVELLPSPVGEVRKKRVLLVDASQAKRDLRAEVMRKLGIDVDCAADIAEARSWWRADLYDLVLIHMEKGLGLRDRFCADVRGATPPQQLAFLVGKPEYLATSPAVDDEELLLEDGGDPMTGEVKAALSANVGNLSQRWGILEASRRISAVRSACTARNRAIRDRPAPPRDSEGRVAKRIVQSATLDDLLREAANEEPLRG