Scaffold Ga0335078_10000083

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000083
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 172599
• Total Scaffold Genes: 153
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (79.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001287	Metagenome / Metatranscriptome	731	Y
F011927	Metagenome / Metatranscriptome	285	Y
F012995	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_100000834	F011927	N/A	MKSRQGYKGYIIVARSCELQAGGFSSEFSIEEHEADGFMETEFYLSETFPTLESAIEAGIQAGRRKIDAGFERGSAVVNG
Ga0335078_1000008343	F012995	N/A	VVAVVRGKQNAEATVKELESSESSTDRHEGWRYFIEKTEMKAGTDPAEATQRRQAELEKRESKALDETNSAILPGHDPRR
Ga0335078_1000008394	F001287	GGAGG	MKIMHLCYAAIGFAVARWIFRRQALPVVDPVTRFRSQGLM