NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335078_10000031

Scaffold Ga0335078_10000031


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000031 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)270425
Total Scaffold Genes240 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)153 (63.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001021Metagenome / Metatranscriptome804Y
F005362Metagenome / Metatranscriptome403Y
F010024Metagenome / Metatranscriptome309Y
F016582Metagenome / Metatranscriptome246Y
F067184Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000003118F005362N/AMNLLLVNRVLHIAATCTSLGGLFYARIVLLPSLQMLSEPERGVFLGQVIRRFAYIKWTGVTVVAVTGIIQWLHTYPFVTHQQLYLIYFAVKMTGAVGLFSITFLLALPADALRGMQAKRALWSAVNIICGLTILIGAALMRTAH
Ga0335078_10000031223F067184GGAGGMAVEHARFFLGLTLLLVVGAWPLAVPAQDGTSKTNSVTGCLQKGVEPGGFTITGEDGTVWELTGKVDAAHVGHKVTVSGHSVQKSKTDEAKLADDEKQEANGKPYADFRVSSLKMISESC
Ga0335078_1000003154F010024N/AMADKMETSFAVIRFNERTYQSAGVIAVIKGMETAQRTLNDYDWCQSSEDRRAGWRYFIEETDLRPGMDPDKATKLRQLRLDMLESQA
Ga0335078_1000003155F016582GAGGMVWQPIQNELLVTLGHFYEREPDHFLRLPKQTVDSAAARVALAELRNEGYVEEQIRGEVRLTPMGYKAYKNKPVI
Ga0335078_1000003191F001021GAGGMKKSMAVGILSACLSFVAGIAVAERVHDWRDLEAVHNHVQEAIQELETARAANHYDMNGHGVKAEEHLRAAEHELHEAIEWARMAH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.