Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000028 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000028 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	278537
Total Scaffold Genes	243 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	185 (76.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

278537

Total Scaffold Genes

243 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

185 (76.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018979	Metagenome / Metatranscriptome	232	Y
F022720	Metagenome / Metatranscriptome	213	Y
F045224	Metagenome / Metatranscriptome	153	Y
F045437	Metagenome / Metatranscriptome	153	Y
F092540	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000028109	F022720	N/A	MQRPAGITATAVFFGAAAAYLWTIALVKLVAPDAISLMRGAPLMFGFELAGPYMALLVGCGWAVVGWGLFRLHNWARWAAMLVMVLGVGMLIPGISTAELGAPLFWEGLQVALRVAAGWYLAHAPAVIDGFHRKPAA
Ga0335078_10000028152	F018979	GAGG	VIFWCRRVTVLLGMSVLLTGCSPHKTAARVQAPEIRLQSVPQADPAQYDQIQDMKKWRNPYLIVRADGVALYDSADSAEIIVKPQDVIPELSRLPASNWPYGRVVAATENAADGSDQNGVAMRRNKGIVGGLLASAHVAIRWVPGT
Ga0335078_10000028226	F092540	AGGAG	MSATPSTTIVTNLKNAATPTANTLKAANAAGIDANGMLALAQSKALELKTCLTLLARATDGADGNLTTINNILASLS
Ga0335078_10000028227	F045437	AGGAG	MSVSEISVIRVIDREFQQDVLEKLSRLEAKMEMLAGNGQPGRMTLAEERIVALERNDVRRTVIERFVNAGIAILISVAVALHGHWWK
Ga0335078_10000028228	F045224	GAG	MSQEMEMQRSMGSAGKAAAYTSKDFQLEVLGQLAEMQEAAESLRESFAREASRQQDSKLLRFDGRTLIAIGAIALSLTGYVLQDARNTSKRDAEIETMKARVTRLEEIAATNTEGRVRTEVELGELRDGQAEIKRMIEAHDTASKKGISARMSGGRGEPGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000028

Overview

Ecosystem & Geography

Associated Families

Sequences