Scaffold Ga0335078_10000024

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000024
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 299287
• Total Scaffold Genes: 290
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 224 (77.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F003117	Metagenome / Metatranscriptome	506	Y
F016073	Metagenome / Metatranscriptome	250	Y
F044616	Metagenome	154	Y
F063538	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000024129	F016073	GAG	MGDSSIAGRTAKLRREIELIQQEECRYRSRKGHSLTENAEHDKREFRVLAIREELRTLVEKARQQSSHGSVWYG
Ga0335078_10000024156	F044616	AGGAGG	LSTKVAAVPPAPETIECPLCSGVGELSRAEVLDRLGVKDFARVAQLSAQEAFRLLSREHQSAWSKFDVELAKRTAELRDRFKDELRIAVSERDNLSRRVEDSLREIVQLRDRNQLLEGEMAKVARVGKREEMDFAEEARSWAGVWISDKLPRNGDFILCYRAPNGEPVEPKILIDNKDKATIAEGDIDKLVRDAQERSIPVAVLVARTEEQLRQADKESRWSRRDSVWVLRTTRQWLPRDLDVLKVIFENMRLHGTDFLERNLALTDELRRTFADLDRVDAELKKAAKAISSASGLVTKYRGRLQELCDSAVGRKLPTGMRNVCEDWVNEDRN
Ga0335078_10000024159	F063538	AGGAG	VKEEKTTVTSFQFRLNGLAITHLKIRPVAIGGTKDRWELVACHKELGEFAIDDNEQLRDPALTQFVLEVRDVTVPPIERRYLPNKGWKRITTSECLDLLESAGMIDKL
Ga0335078_10000024205	F003117	N/A	MPERTLKLVRFIGSTPSLAYCDVCRLAFRTRQEFLIDFDKAKQQLQEDFDKHECKPEESAVNDALSHIR
Ga0335078_10000024213	F000269	GGCGG	MGTFGKSATRNGKYLWVVFGFLLSLAYAKDQPPPKPTDVPATVIAHLPLPVSTGSQMFLQKQNDRDYLYVQQATKQGYLVVDVSHPDKPSLLKRTAQSNPATAGNLEMISPDVAIAEAPEKTPTTLSSSNHPTENVRVLDLTDPRNPKVLQEFNGVTSILPDGGHGLVYITNDQGLWVLRYNRPALLEPSKKKPPCDSNSEIMAMPPDCD
Ga0335078_10000024214	F000323	AGGAGG	MRKTALCVLLLSCSFVLAQSNNSNDSSSKGQITIQGCVSRASGDYILIKQNPAMTYELQATGKTKLRRYLGQRVEITGKQEPSMSTSSDSLTRTGSASPVTLVVDSIKTISNECPVRAAG