Scaffold Ga0335079_10162275

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10162275
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2501
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F051827	Metagenome	143	N
F078490	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_101622751	F038201	N/A	PPVKPGPRSAPRPVQPDVFTRNVEYMVQQVAGEHASKTFRMLQTTFPGLRNFEQLRAFAKLYVANGLKPLQFRPLPSDIDPQRLKGELALRFHNGMIVLAPDERIVCRGPDAFGPFDPARAARFSRQLSAESPTNDEKGHVLDPETCAPAAVGMFPLDLS
Ga0335079_101622753	F051827	AGGA	VKRQIYVVQNSGGVSLEVVGGPFDPDAAGEIEEAIIRRVKEDSGLRHGGDDTLHTLEIAPGCTPEFGGFSGGYMENIRWVAAGCPAEEKPDTWDQLDFALTSKENARETNGI
Ga0335079_101622754	F078490	AGGCGG	MACRKNRLTRVEVEKCEFNGQQLRFVTGRTRDVAGSRKLSRLTSLLLPRGTYEKRIPRAIRKLLIP