NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10004496

Scaffold Ga0335079_10004496


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10004496 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16042
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000633Metagenome / Metatranscriptome971Y
F067184Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000449614F000633AGCAGMEGADKLRFEVNGQMFFVNFVPEEGRWYCYAPTPTGVQRIPVSMDSSPFDASFIIAADEQAKEVLN
Ga0335079_100044969F067184AGGAGGMCSNARFSLTFVVVALLTLCALEIQAQEVTDNPHAVTGCVQKGIEAGGFFIVEDGKMWELAGKVDAGDVGHKVTATGHVLHRSAAKEAKFAEHEKQESSGKWYGDFQVTSLKVVSDSCQ

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