Scaffold Ga0335079_10000152

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10000152
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80404
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (79.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000867	Metagenome / Metatranscriptome	854	Y
F005007	Metagenome / Metatranscriptome	415	Y
F005269	Metagenome / Metatranscriptome	406	Y
F012893	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_1000015239	F005269	GGA	LTNEELNASYAIIRHNVRTYRSAGVVEVVKGKQQAESTLLKIQSCQDSSDRHEGWRYFIEKTDQKPGVDPIEATQRRQQALETRESKAMQVKNPVIPPDIQQ
Ga0335079_1000015247	F005007	AGGA	MTIPIRGTAALAVAAAIVAATAIWLPAYRWFLLISVGIGVAVAGGLILWHRLRPVKEDDIENKRPLGLG
Ga0335079_1000015266	F000867	GGA	MRNALLIIVTSVLFFVSCSPRDMLSRRLATDLIAASDGFNAPQQFLLRTGVLTNKDYAAPEYLILQHKGWISASTVACSANLGPPPCWDVLLTPSGVETVRSLVSSQEATKPAINLPVAKRELVSINGISKDGSVADVEFTWKWEPLNEVGGSLYSSDLRYKSIVGFRKFDDGWRVLQSSAHSNQTIEEALKNAEPTS
Ga0335079_1000015280	F012893	AGAAGG	MAITFMAVVAGMVFSLAVALLAEELIFGQVFRLFFARPAVEVKAQPKP