Scaffold Ga0335079_10000125

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10000125
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89360
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001621	Metagenome / Metatranscriptome	662	Y
F032359	Metagenome / Metatranscriptome	180	Y
F045889	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_100001253	F045889	AGGAG	MPASTHPVRQSSPAPEVSRPLPVTTSSVTGTLVLLLRIVRWTLYVGVLVTLILLLHKSAPPPVAATPEAAAQVEKKFQDVQQAVSQGQPATLRMNETELNSYLASRLDLGEEPSETADSSGMATDNPDAVSAADPVRSNVRDVKVQLVQDRVKAYVVFDVHGKDMTLQLEGKLGADNGFLTFEPVSGQIGALPIPQSTLEAAVRKLMESPESREKLRLPDDVSDLKVENGEVVAEYQ
Ga0335079_1000012566	F032359	AGGAG	MSWMTRKLRIPASEGSMGIILTICVVAMGLMSIALLWQAQIIANQREAIQYLETVKFGG
Ga0335079_1000012574	F001621	GAGG	MNSQVPKYVTRGRAALLLGIPEDELSRLSLESGLGHRERAGEQEETFFTYEELRKICMLTVHHVN