Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10000014 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10000014 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	236211
Total Scaffold Genes	209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	128 (61.24%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

236211

Total Scaffold Genes

209 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

128 (61.24%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006516	Metagenome / Metatranscriptome	371	Y
F009346	Metagenome / Metatranscriptome	319	Y
F082249	Metagenome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000014194	F006516	N/A	MPIVLFATVAASVGFGIFTAYAVVIGILHTFGPASRPEPVVARPRLVLVPSQNHASGD
Ga0335079_10000014203	F082249	N/A	MPRTRSISFLVALTFLLSALPAHSAEQPPWLEIHSAHFTVITDAGEKKGREIALRFEQMRAVFASLLTKERLNQPVPLTILALKSDKDYYQAAPLRQGQPIGVPAFLLPGEDQDFIVLNVFEEESWRSVAHDFAHMFLNYNYPPAQGWFDEGLAEYFSSIRVDNRQVEIGGDPELSSTMTEDLLGQQHETTPSKSLTELLGAQVWLSMPDLFSMKHDTSSYNEGTHHTLYYAESWMVMHYLLHEKKMPETGAYFGLVLNQGVPMEEAIQQAYGMSAAQLEQAVKDYFHSLTALQAAVDNARTRNPDPDRGANPSQTNHFPVPVGPDDSAIVVKPLPEADARAYYAAVQIRIPERREAGLQTLHALATQATPTDVKAEAKATRREKKNADEDEGTLPTTAVGNALAHRALAWDHIQRGEFDDAVTELAAAAALNQRDMWVRYYLSAMKYRMAQAKHTDIQGLANMMIDLKSVLEWYPELADAYDLLAMARNEGGTTPAAMQAERAAMNLSPRDERFVYHLAQIYISSKKWEAAEALLDRLKTSSNPQIVALARERLEQVGNERKYGVVGAASTQPKFTPQKSPFDVLEEDAAKRAAAEKNPQSGVTADARATKFFKGRLVAVDCTQAPAAVLTVTAEGVVLKLRAVDYKSLLLIGADDFSCTWRDRQVTVNYKPGGLTDGDLVSLEVR
Ga0335079_1000001463	F009346	GGAG	MSFEEALALASRDEGFKATVYAMNTLLIHKGIYTQDEFQTLFVEWVEKEQRRKAPNARRSQSSSAYSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10000014

Overview

Ecosystem & Geography

Associated Families

Sequences