Scaffold Ga0335082

Basic Information
Taxon OID	3300032782 Open in IMG/M
Scaffold ID	Ga0335082_10105006 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032782 Open in IMG/M

Scaffold ID

Ga0335082_10105006 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2795
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2795

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F036885	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_101050062	F036885	GGGGG	MTGKKDRERVIAEITLSHLMRLWNEQGCPMSREQALAFLNQKGRAFEMWKHMMHATEEFIAGSLFQHSFSSAEHNGFASRPRPARSAGTAAQ
Ga0335082_101050063	F010114	GAGG	MIIELNNDETRLLHTVLLEQAQEHLSYADTSEVAERLYKLANRFEGRVRELPNMTTA
Ga0335082_101050064	F001596	AGGAG	MSWFHSSTAPVDARNHASPAEVVACFQDQGNVLSQLAFLITGDRATADRAVVEACEITLQGNSPFRDWLFEWAKAATIASAISHGAKAIRICEATYKDQRCLHDEHLSQGDAEERAAGLDLILGTDTQTLIAELDSLCRAVLVLRVAIRSSIQDCALRLNVSRAALLAANCHALTWLQKRQVKPVEENHILARI
Ga0335082_101050065	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAVQARRLVTKDVLPKDLIVDLTEVSYVDSVGEQLLNWLASIGAVFVAGSVYAFAVCDRLRLPLMRKIVERRKRRHERGRERSSINHSHPVEAV
Ga0335082_101050066	F006399	GGA	MTTPALNSRVQSLVTEYGVFWQFWPQFEQIHGDRHLVGFEVELIGGHTSNLNHVDPRCPTCRSVRAALLSIANLVPADLAVGANFLTYNIDSHSGEILCLPALGNRAAVWVSIYLSWNRTNGQSRETDLLTEVRTLLNKWGIHQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335082_10105006

Overview

Ecosystem & Geography

Associated Families

Sequences