Scaffold Ga0335082_10027169

Overview

Basic Information

• Taxon OID: 3300032782
• Scaffold ID: Ga0335082_10027169
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6098
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045921	Metagenome / Metatranscriptome	152	Y
F072401	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_100271695	F045921	N/A	VTATPPPRIAGLTEPSVRPLERVAIRLRESSVTLSAWRMAVSGPEGAGTLVRVETSGGTLFRGEGWFLGWTQEAMSGAWTELLPLPDSDVLDIPQLG
Ga0335082_100271697	F072401	GAG	MESTEERRTLLVVDASFDLGNALAVAALEKGWEPFLAGNAEAALSILPGILGEVLVLVDLSAAVSRGLALLLTLRRNPPPPGVRVVVMTSGQPIPEAVRRAPFVVGAIRRPRHPAEAEALARALLGAPDIARPG