NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10561044

Scaffold Ga0335085_10561044


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10561044 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001520Metagenome / Metatranscriptome679Y
F079847Metagenome / Metatranscriptome115Y
F094226Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_105610441F094226N/AQPVIGGGGSMDPRMLHTLLINWIAFLCFAFLVCWSRFRLETLQREVEHAHAMESLVGAEASAKASMPLSRSAK
Ga0335085_105610442F001520AGGAGMNALKFLFAAYIATWVIHCFYIGTLVARFRKLRQQLKELGKGK
Ga0335085_105610444F079847N/AARVIRVEDPLPSARVGVAAMIEDYEFLRSGGSDFLSALQKGMQGH

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