Scaffold Ga0335085_10435691

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335085_10435691

Scaffold Ga0335085_10435691

Overview

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10435691 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1512
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014275	Metagenome / Metatranscriptome	264	Y
F016870	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_104356912	F014275	AGGAGG	MHKLVVKLDRAGAGNHVSRWKRHMDQQIRRAVKASRRAIHASNHSASPHKAERVALKMKKAVVKAAMGL
Ga0335085_104356914	F016870	N/A	RSFVAAFVGRLREPRRSTKREERPAMYDRTIDRMSDGASEFLVQFYLNSPKLSVSILLAVWLLLFFSALWYFILLPASSNSLANGSFEARLAGWGTGWLEDFPAYRGAARLNQYLATRSSQTGQLAVADWRSDPAEHRPGGRFALLVEHRSDKQTEVYSTLAQRIRVRPHTGYSVRFWAKVDRMEHDGDLWLSPNGGSVAWDEPKVEVAGAGKGWQFYKLDFNSGDRTDLDIRFVAEGPLKAWIDDVVVSRVPASETWVEKAGIWLRSLWNILR

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