Scaffold Ga0335085_10062784

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10062784
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4957
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F008431	Metagenome / Metatranscriptome	333	Y
F064903	Metagenome / Metatranscriptome	128	N
F090320	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100627842	F001528	AGGAG	MSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQATVFECIRKLFSLTRGRFSVREYRGGARTVRVS
Ga0335085_100627843	F008431	GAGG	MTTRRRRDRGDSEKSGEERFFLAGGSRNGDVPALGRECTSEAEAIINAFREQVSFYRVSEFQTRADVGPSGEPILRKDGLKKNNPAS
Ga0335085_100627844	F064903	GGAGG	MRSLIPSNCDRADVLMSAGCSTFVSAALILVIPRVGVLLLEILFGLFFIGCALMARARIRRRVQGKAGSKTSSDAKAKWFDRYDVLMILAVIAVQTAAGGLLRKAGWSEGTVSILPLVMFAAGILLKPRVVELVERHRKTQPADADCGSTAAQPQNLDPTDRVLGPE
Ga0335085_100627845	F090320	GGAG	MIDPNTNRDRENAEFWTLSKFGGLDQLDWLMILVSVLIGTFAKQHHFLQLPDGFLEWVFPFLLMMAGYKARGWSTEIIEVRWEKAMKAAGK