Scaffold Ga0335085_10047888

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10047888
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5804
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022629	Metagenome / Metatranscriptome	213	Y
F085284	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100478883	F085284	GGCGG	MSDPRRLRRLFGAAAHLCQVEADLAAAGYPELVARLEDIRAVIDLEIACLAPDDLGQPHC
Ga0335085_100478889	F022629	AGGA	MWLDRYSTVCRECPDVVAVYEAPDGRLALLLRQTLVPLPEEFSSLRRATRCAARTVSGKLRAAGFHGGFVVLQWQPLGTAASAMKTWPCRYDADPARRTQLAAVAERYAADERYLTSHVQARRRITPPVLGVSPPFASPPELHALQAWYDAMAPSWLGVEPLLRRALVLKTHRWIAERILIPAADGRTPPFEIREGIAELGAALIEMIPPDDRAVWSVWVGLVVGDLERAMRRPTDDWNQAWVRWLLLIAYSVPVPRERRAPMWPVKPTSLAAVDPYHI