Scaffold Ga0335085_10027591

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10027591
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7962
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045921	Metagenome / Metatranscriptome	152	Y
F052001	Metagenome / Metatranscriptome	143	N
F072401	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1002759110	F052001	AGG	MSAYVDPDELMLFSVGMVLGVDTLDYMVDVVLDRRLTKADHRKLSLALQRKGGKLPVRVDEVVHLVAQPPSARPN
Ga0335085_100275912	F045921	AGGAGG	VRPRPTGSNGPVAAPPGGATLPHVTGTPPKRIAGLTEPEVKPLERFAIRLRESSVTLSAWRMAIAAQEGAGTLVRVETPGGPLLRGEGWFLGWTQEAMSTAWAELLPPADHDRLEIPQLG
Ga0335085_100275914	F072401	N/A	MQPTAEPKTLLVVDASFDLGNALADAALEHGWEPFLAGNAEAALSILPGILGEVLVLVDLTSAVSRGLALVLTLRRNPPPPNVRVVVMAGSQPIPEAVKRAPFVVGAIRRPSHPSEAAALAGALFASPDILHA