Scaffold Ga0335085_10007817

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10007817
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16427
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017860	Metagenome	238	Y
F055285	Metagenome	139	Y
F083636	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100078173	F017860	N/A	MMPPMTAALLLLATAAWADHGGALLSEGPSPLMVGLLTGALALAAGVLIIVIVVRLTRKPPSPE
Ga0335085_100078177	F055285	GAG	MGTFLLLLVALAVPLEASQPLHLHEAGTVGLYNEEHVLASLDSVSGDLPLPDAPPTVFIAHVGRAGLLASSRFATPVVSLSDSRAPPAAS
Ga0335085_100078178	F083636	GAGG	MRVLIAAALVAAFAGCASAPGSTPLSAEDVRALTGSWQGWLVTEGGFSLVTVDIRADGSFEVTAPLVRASGLLVASDGRLRFDGTGPWRGTLVPEGTGEHRSLRIERDDRLYRGTLRLVSPRSAGAPATSIARP
Ga0335085_100078179	F055285	GAG	MIGRGFRAVMVTLLLVLVALAVPLEASPPVHLHEAGTAGLYNEEHVLRSLDSVLGDLPLPDARLAVFIALVTGACLTAGARLSAPALALADSRAPPSPSPSAP