Basic Information | |
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Taxon OID | 3300032770 Open in IMG/M |
Scaffold ID | Ga0335085_10007817 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16427 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017860 | Metagenome | 238 | Y |
F055285 | Metagenome | 139 | Y |
F083636 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335085_100078173 | F017860 | N/A | MMPPMTAALLLLATAAWADHGGALLSEGPSPLMVGLLTGALALAAGVLIIVIVVRLTRKPPSPE |
Ga0335085_100078177 | F055285 | GAG | MGTFLLLLVALAVPLEASQPLHLHEAGTVGLYNEEHVLASLDSVSGDLPLPDAPPTVFIAHVGRAGLLASSRFATPVVSLSDSRAPPAAS |
Ga0335085_100078178 | F083636 | GAGG | MRVLIAAALVAAFAGCASAPGSTPLSAEDVRALTGSWQGWLVTEGGFSLVTVDIRADGSFEVTAPLVRASGLLVASDGRLRFDGTGPWRGTLVPEGTGEHRSLRIERDDRLYRGTLRLVSPRSAGAPATSIARP |
Ga0335085_100078179 | F055285 | GAG | MIGRGFRAVMVTLLLVLVALAVPLEASPPVHLHEAGTAGLYNEEHVLRSLDSVLGDLPLPDARLAVFIALVTGACLTAGARLSAPALALADSRAPPSPSPSAP |
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