Scaffold Ga0335085_10006963

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10006963
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17691
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005269	Metagenome / Metatranscriptome	406	Y
F010204	Metagenome / Metatranscriptome	307	Y
F018587	Metagenome / Metatranscriptome	234	Y
F018838	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000696324	F005269	GAG	LLRLNFVGPFANGFLLTINDSSASYAIIRYNIRTYRSAGVVAVIGGKDQAELELKKFEDAQDSSDRHEGWRYLIDKTDLKAGTDPAEATLHRQAELEKRESKAMRDPESPDFPSQHRQR
Ga0335085_100069634	F018587	GGAG	MDTVLRALVVRARSLRAFIAASLRKMLRMEPRDGDFASQRVCPFCARITPRYETCCLECGKALKAA
Ga0335085_100069635	F010204	AGGAGG	MRSFSEQTSVLGPIYRLVGEGLNDDDIAVKLDLTEAKVRGCIAWIVRFLELKNRQELVLCASRAA
Ga0335085_100069639	F018838	AGGAG	MLPKQNKQQNQKCFQIHKNGAPVDGVSYATLVEASAALEKAGQGGEVTAVDGLDQIVRRYTADECRNARNSR