Scaffold Ga0335085_10001598

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001598
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46711
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007764	Metagenome / Metatranscriptome	345	Y
F058377	Metagenome	135	Y
F095904	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000159829	F007764	N/A	MPVTVETHNTGDAALQRDLVAMIEHVLSDRPGDWRVEILGSQGTDRWEMKITGPNAFERSYTLEGNLGQHEPSTVSAIIARMLPAKN
Ga0335085_1000159836	F058377	AGGAG	MNFDRTEASAYGQLLQEAAARTGFSTFEMQELLDSELHIDHLLNYITAVVSDRMN
Ga0335085_100015989	F095904	AGGAG	MKLNRVLAVSSVFAVALVAIFLPVAGSTVQAHDSCKSFHAVLQFILPTPNQFDPSDTWGGPIFGNLGTEFLQGGISGNDGTEYPHGSMSIFKDGLYKVCLTPAAAWGGASDCLDSFTYKAQAVVIWPAGESLGSYKATAKIMKGTHRFASASGHLEIQTPFIVWPDPNSVFTVSGRGSAEVNGKICNVQ