Scaffold Ga0335085_10001296

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001296
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55255
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (94.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005890	Metagenome / Metatranscriptome	387	Y
F060654	Metagenome / Metatranscriptome	132	N
F061074	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000129617	F060654	AGGA	MRHKGVEYPELKGKTVRRVWFKDDEEFTALFLEFEDDTRARFDLRAAVTFERAPEMCSIAPNGDLTDWNDLRAQRLAPHES
Ga0335085_1000129618	F061074	AGGA	MASKRKKPIERHPYCRGRKCRSCTWDSLHITVDGPHPRYTKGHRGFYNGDIDAAIDDFLIVLKGESRRLLRDCAAQTPALKQFNLKFA
Ga0335085_1000129640	F005890	AGG	MSFHAANPAGFPYLASCPVESANKSLSTRNYGGELRPSWSGSCRSNRAAIAVNFRSQCADDNFALERVCRYVYRLLLGHSFGAFPAPGGARSSASHCAPLWGLGSSQNKFENHGKERLSNFFRAPPRKQTFGTWESGPLAKLRPV