Scaffold Ga0335085_10001266

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001266
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56130
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F021509	Metagenome / Metatranscriptome	218	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000126610	F000624	GAG	MPIQWYGFLTAIAAGGVQFVLFLRWLHRRMRDDEIVRTFVRDIATNHLPHIYSALRDIAEQQGIELQDPPLVRFVDLHGHRRRD
Ga0335085_1000126614	F000703	GAG	MSVREYRESDLAALRTIHAAQGFDYPLPDLRNPLFVTKLIFSKEAEEKGAAEHESQQAQIVGAALLRLTAEAYLLLDPKAGTPRHRWQWLLNLHAAAERDAWQRGLEDVHAWLPPPIARTFGKRIESLGWHRDDTWTPYCKRLTAKV
Ga0335085_1000126616	F000781	N/A	MLTVAQLAPIKDRDPYLYETLTKIVASLNATSQAAGVDPATPAPAPTAVASINVQASNGWFDISVTDPSNSRPGLFYFAESDTTPAFSSPRVYFMGAARNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGSPPTAVIGGGVSGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRIMRQSVL
Ga0335085_1000126622	F000696	AGGA	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDASLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYAKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAASDAIEDLVSAAIRREQQSLRRRRPFSSRSGYTPF
Ga0335085_1000126624	F000512	N/A	MIHILRETHDTPENVAEFLRRAGGINRFGEPNYRVVWGWNRLAWIGGKFAEHDPATGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRLWYMQTIERENGVSIPALGPYPSRGEYEHCFTLEGPSGEFIQLTPTAAEHIARAIEFSRRFSRSLTKRSLDDRARNEERAYESWAYDQLDDAVPAFHKQPFVTVA
Ga0335085_1000126631	F021509	GGAG	MSSVTAVPSFFEKLTNAIHLDYVLKIAGVGGFVFAFLASWHTLGLGVKFGMLASVAAWLVGSRFSKIYR
Ga0335085_1000126636	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEAPDCASRMVLFRLYYLGLAPYENARHFVGLSERSWVNWTEEVRRRCGKELLLRGMFPPRKYFSNES
Ga0335085_1000126639	F085961	GGAGG	MPIRSSQPPWEFLLSASRNSLQSFELSRLEHAANLRKEIGALLNQWVDESAAAMLARWLMEQRERSAKVPEALSAAESGKNGAHLVSDNFLADRAVSQPANGGGF
Ga0335085_1000126643	F000536	GGA	MVELTPRQMQTMEKLFEAGFRPLAIPPNENVLCVRRGDCVAVLSPVPDGGLKLLASPSYLIEGNFSVRLKRGANEVFVWKKSELAATPERLQELELFRRELSEVLGSSQVQ