NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000102

Scaffold Ga0335085_10000102


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000102 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)274885
Total Scaffold Genes256 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)175 (68.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047180Metagenome / Metatranscriptome150Y
F064648Metagenome / Metatranscriptome128Y
F094810Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000102157F047180GAGMKVWFLVVCAIGALALAQDAAQPLASFAGTVKRINATTLTLARQDQEDLEISCTHKTHYFKGDKKIKREEVQRGDRVSVETKLDLYLRPEAVNVRVLPPEKP
Ga0335085_10000102204F094810GAGGMTAKRLRYAALAVGAAWACWWVFFATAEAISSGRQLVPAMIFFVVMFGALVLAWKWPLAGATLFFLEGVTSIVMYLPMWWRRFGLGGTVLMFAWMPLPPIAAGMLLLVSRRRLSAGPPAAPAASH
Ga0335085_1000010250F064648GGGGGMTANLVSPFRKRSKSDLVHLRALPSAEPATGTGRVAWIWPEIEAALRTGKKLREVWDAARADGFDIPYPQFRVYVSRLRNRSLNHPPEPAPKPSAAEKSAASDSGSPAANDPFRNLREQREKKQSTGFDYDPFSIQKQLID

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