Scaffold Ga0335085_10000089

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000089
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 303110
• Total Scaffold Genes: 265
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 187 (70.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000749	Metagenome / Metatranscriptome	908	Y
F009101	Metagenome / Metatranscriptome	323	Y
F013245	Metagenome / Metatranscriptome	273	Y
F058377	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000089102	F009101	AGGAG	MKRAIRIAILTVGLVGTFIAASVQQLPASDGGPLPLCPPKNQNCQASK
Ga0335085_1000008942	F058377	AGGAG	MNFDRTQAADYGNLLQEAAARTGFSPTQMQELLECELGIDHLLDYITAVVSDRMN
Ga0335085_1000008954	F013245	GGAGG	MPGKSFWVLVLSIVLIMVCVASAKTGDEKNEIGGTIGRVFISDQGIQAPIPNPTIHSGKGLTFEGEYARRIYGTELFGISFEGVVAYNKGVKLNAGEYPYSVVPEGYKELFVTPAVRVNLFPQTAVSPWVSLGGGVTHFMQNSQLLFGGANPGKNTTSGTLEAGLGLDVKVWKQLSMRGGVRDFWSGMPDYPLAPTGKTRQHNYFVFGGLFWRF
Ga0335085_1000008992	F000749	AGGAG	MNARGTSPSLAPHVTIRVSGKLFEGHLSYLDQLVQSAAECHLWPLLSLAALEEVDNSALSYLIDGEGKDFGIISCPAFVQERLRDERERAA