Scaffold Ga0335085_10000026

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000026
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 564256
• Total Scaffold Genes: 507
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 380 (74.95%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000389	Metagenome / Metatranscriptome	1198	Y
F025667	Metagenome / Metatranscriptome	200	Y
F038120	Metagenome / Metatranscriptome	166	Y
F043252	Metagenome / Metatranscriptome	156	Y
F047521	Metagenome / Metatranscriptome	149	Y
F075293	Metagenome / Metatranscriptome	119	Y
F075575	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000026100	F075575	AGGAG	MYERNRLGQMILEHWQKHRPQMVEELQRTNQLDQTIYEAQETIGDLLYELVSVQKMDYQAAWEIAMREWALPASPARPQSSLAGTPTSR
Ga0335085_10000026119	F075293	AGG	MWNFLFLAFQWHRGKRGFVILSLAFLAFLLHAVAHAH
Ga0335085_10000026124	F038120	GGA	MQAQPIPKTPAKGAMLEAWQQSLREARQIAKMVLGRAASTVVAERNSGIYRGVIIGHTRDYIIQQIGKQAAAVIHSKDLFHAPDREFPWPEVGRAFSIHYSRSHAVAREIREKLREHGLI
Ga0335085_10000026129	F025667	GGAG	MRTHVILSSLLLLMLCSCTRERPSRIVKLAEQAGSGQLSEASTVDMRVWLTGHPQIAIRVDALCAPVRTNAPAAWPQTTEGRLCAAARVSVSQIDAQRHPRPNPDTTGFLPGWK
Ga0335085_10000026136	F047521	GAGG	MGVIIVPFNYNEECNFSVVPICVGDIDPDGNPIHRAWVEQGVVPIADPLRKIASRVLNDVWRVSEITEHAVHSLSRKHGADLGDEPSLRVLKRAHWYAEDLRVGGRRARRKTEVELFSAKLETLQDQFDLVSRLEAQDTLDRLMKELDREGLHDVREMVPMMLRDCTAQEFEARFGKSRNTISQRFYRAMRRAARSAGITW
Ga0335085_10000026390	F000389	GGAG	MFRFDQMIRRDMIVRDVKQSHPETVAVFEELGFRPSCDDCDIETVARKNGISSRDVVDALNRAAFGSAQTESS
Ga0335085_10000026461	F043252	GGAGG	MTSQLAPAQSAEIVWQEDKKHKGWTVHLHIGAEVIKYPHPDSGRDTADAELVSLAVSDAKSDGYELDPGKVKIAR
Ga0335085_1000002681	F047521	GAGG	MGVIIVPFNYNEESNFSVVPICIGDIDPDGNPIHRAWVEQGVVPVADPLRKIASRVLSDVWRVSEITERAVHSLSRKHHGDLGDEPSLRVLKRAHWYAEDLRVGGRRARRKTEVELFTAKLETLQDQFDLASRLEAQDTLDRLMKELDRQGLHDVREMVPMMLRDCTAHEFEVRFGKSRNTISQRFYRGMRRAARATGITW
Ga0335085_1000002687	F025667	N/A	LLLMLCSCTRERPSRIVKLAEQAGAGQLSEASTVDMRVWLNGHPQIAIRVDALCAPVRTSAPAAWPQTTEGRLCAAARVSVSQIDAQRHPRPNPDTTGFLPGWK
Ga0335085_1000002697	F075293	AGGGGG	MWHFLFLAFQWHRGKRGFVILSLVFLAFLLYAVAHVH