Scaffold Ga0314701_10340208

Overview

Basic Information

• Taxon OID: 3300032746
• Scaffold ID: Ga0314701_10340208
• Source Dataset Name: Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_28May_deep (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Magnoliidae → Laurales → Lauraceae → Cinnamomum → Cinnamomum micranthum → Cinnamomum micranthum f. kanehirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location

• Location Name: Norway: Bergen
• Coordinates
  • Lat. (^o): 60.2696
  • Long. (^o): 5.2187

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038925	Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314701_103402081	F038925	N/A	SGFKTTEERLLMSIRLDDLLVRSDGLGNLGVLHAGVSGLGNLELALVERLSLDLPLGFESSNNILVLPPNLVSEPAEGAEPPSVLQPEDLQGRWDDHLLLVVIWRRNSFERLETLESILATLGLVRGHSSDGPPEDLGWGSEVEGSSLGENVATLPQEVEVLQLVTVEVSGHVDPFGSDDHHLVAGEDELGHDGGEAAQHVAPAIDNNGLW