Scaffold Ga0315741_11949864

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315741_11949864

Scaffold Ga0315741_11949864

Overview

Basic Information
Taxon OID	3300032739 Open in IMG/M
Scaffold ID	Ga0315741_11949864 Open in IMG/M
Source Dataset Name	Forest Soil Metatranscriptomics Site 2 LB Combined Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	516
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Sweden: Dalarna County
Coordinates	Lat. (^o)	60.97	Long. (^o)	15.87	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078134	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315741_119498641	F078134	N/A	VDVGVIALTWQGVGAFDATFGVPGDIGAFVQLTGYIFQNGTIDLAGSQNLNLVNFDGTTNYSNHIIGSWTSQWSCLQNLSNADPTYIWSLGSDYFDFSGAGVAFPYHGFVSAFGYHAFALPGRQMPVPVVGGYGDFNGVGGYYQNTIVSPFPVTFHADFFLQGGAF

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