NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314711_10016386

Scaffold Ga0314711_10016386


Overview

Basic Information
Taxon OID3300032732 Open in IMG/M
Scaffold IDGa0314711_10016386 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad11_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2294
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062419Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0314711_100163862F062419GGALTASIEKKMHRVGELGVDIVEMQEDLSDTEKTLMADKEFLANLEKSCATKTKEWEERSKTRAEELVALADTIKVLNDDDALDLFKKTLPSASASFVQTQTSLNLNSRRDKVVLAMKKIWAAANAKHRPGLDFLVFALTGRRALTQGTFDKVIKMINNMVAELKKEQADDNGKLEYCHVSLDSVDDKKKSLERSVEDLENEIERAKELIATLSDEIKALSAGIIDLDKSVVEATEQRKAANEEFKSLMAADAAAKDLLVFAKNRLNKFYNPSLYVAPPKQELTADERIYVNQGGVTTTAAPGGIANTGVTVFTQIKVHEQNAPPPPPATWDAYAKKTEGSSGVIAMIDLLIKDLDKEMTEAETEEKNSQADYETMMKESSAKRVADSKSLADKQASKANTEAALSDFEGDKKDTVGELMATMKYIQSLHSECDWLMKYFDVRKEARAAEIDSLVKAKAVLSGADFSLLQVKKNGFLGRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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