NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314669_10331338

Scaffold Ga0314669_10331338


Overview

Basic Information
Taxon OID3300032708 Open in IMG/M
Scaffold IDGa0314669_10331338 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_22May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)823
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000123Metagenome / Metatranscriptome2053Y
F025290Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0314669_103313381F000123N/AMKNSLFVSVAVCAIGAQSALLRSKSLTAQEPDTSCGKGFDNLVGGSQEYYNTASIKLWAHPYHAADNATFAKEFKCWFALMNTMKCDGLPSQADGRKDKLTKACLAHDTEWYPIWKMFSDAEVKFFKDNYPAVPIEGDKVVVVDNEYKSAGINYKQAMTTAKEVNKKELLCLTLFTIDDECVKWPY
Ga0314669_103313382F025290N/AGLARIKTRRKPATKASKKMMFGKEVVVKAKPAKTVVKAFPAAALKGAI

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