Scaffold Ga0316225_1076940

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316225_1076940

Scaffold Ga0316225_1076940

Overview

Basic Information
Taxon OID	3300032675 Open in IMG/M
Scaffold ID	Ga0316225_1076940 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1167
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018308	Metagenome	235	Y
F042131	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316225_10769403	F018308	N/A	MATQRREESERRLKRQRPGIRKEGGDEFKASPTRGRIKERFILRSHERDEKEIDVYKDGKRPKQPD
Ga0316225_10769405	F042131	N/A	KITNTSLTTPTSGQIEVTLRYNQNDMNIGNSTTYPYGNFD

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