Scaffold Ga0314678_10053984

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314678_10053984

Scaffold Ga0314678_10053984

Overview

Basic Information
Taxon OID	3300032666 Open in IMG/M
Scaffold ID	Ga0314678_10053984 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1381
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location Name	Norway: Bergen
Coordinates	Lat. (^o)	60.2696	Long. (^o)	5.2187	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052362	Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314678_100539841	F052362	GGAG	MRLIQERDEMATEKCSEISQVEQGRRVFSSKVATLSVCFGIAVGVSVTLAIKQMPVASHSMASDALIDFALVKKNKSSKKEKVLPKAEECSLATTQNCAKSQCCDNFGFQCYSKNKTFAACLKKCDPQHMATGGNGTWSCQELGVRTRCATTKENCLPYGCCADAGYQCYAKDDNWGQCMMSCDPGTQQTVDKSKWWCAPIGPRNFADYKGDFIPGFTEVEPWVKNCTPLGQNCASTKCCAWTGYKCYEKNATWASCLSSCHPKKWNGGVSEVPLVQQGKPLANPPAHWNVSFTPASPGPWTCKRLAPAAKPGKLNGTALFCFSVAINNTGGKKKSEDIELLLQAQKLKTHVFACERWMVFSDVEVTLDTTAGGFMKVAYPKGIKRPNTKNYVNLPVFLNVWSAIKTDTNWKSFPWVVKADPSTVFIPQRLRELVR

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