NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316232_1140537

Scaffold Ga0316232_1140537


Overview

Basic Information
Taxon OID3300032605 Open in IMG/M
Scaffold IDGa0316232_1140537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F047435Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0316232_11405371F047435AGGAGMTKLTLLAVLGLIYLGVLRLAYFFMAVFIILFFGMTTWELVRTAGQ
Ga0316232_11405372F009261GGAGGMILTPSNTGNLVAGAGLGIFAWSAFLKADKVPWLKKLMTTKRKELSLDWINRNKGISLLGLEAINLGIHGILSANAVIFALGNTILNIFMLWAFLPFRMARAEKLRIHNVLKGVA
Ga0316232_11405373F005296GGAGMAAWLLWFLPSFEAGFWSALIAGKLRGRGRTRELLVYGRHVRTCLPLIDDRLRKAAGTPTKSQAFAARRIAAVLRWLANTRAMDYAILLGLKRIWPKGQAISTEVKVCL

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