Scaffold Ga0316223_1126187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316223_1126187

Scaffold Ga0316223_1126187

Overview

Basic Information
Taxon OID	3300032560 Open in IMG/M
Scaffold ID	Ga0316223_1126187 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	876
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F047435	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316223_11261871	F005296	N/A	FWSALVAGKLRGRGRTRELLVYGRPARTCFPLIDERLRKAAGTPTKSQAFAARRIAAGLRWVANTRAMDYAILLGLRRIWPKGRTIRAEVKMCL
Ga0316223_11261873	F047435	AGGAG	MTKLTLLAVLGLIYLGVLRLAYFFMAVFIILFFGMTTWELIRTFRQPAKHRF

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