Scaffold Ga0315273_10541650

Overview

Basic Information

• Taxon OID: 3300032516
• Scaffold ID: Ga0315273_10541650
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F034044	Metagenome	175	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315273_105416501	F004450	N/A	AALIALVMSAAYLLDGPSEHDARVDTAEEKIQRLCGENAGWKMLEDGSVQCYTHRGLKTRKVTL
Ga0315273_105416503	F085065	GGGGG	MTKQELLKLLKLLSAIESAMSIHKATLPDYLFQQIDAAVAVLEREILE
Ga0315273_105416504	F034044	GGAG	MTQDDIILIADASGISYYGMGKDRDKFVHYLERFAALVAAAEREACAKVCEVQGDYDWQQYADAIRARGNT