Scaffold Ga0348332_12251124

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0348332_12251124

Scaffold Ga0348332_12251124

Overview

Basic Information
Taxon OID	3300032515 Open in IMG/M
Scaffold ID	Ga0348332_12251124 Open in IMG/M
Source Dataset Name	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2588
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0431	Long. (^o)	13.617	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022024	Metagenome / Metatranscriptome	216	Y
F031137	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348332_122511242	F031137	GGA	MDHAQFKAKQTAAVYVADGLDERTLEAFEMHMMGCTECVDDVETWRAIKVNMPTRARPARVPAVLGRNTHAAAGWRMAASLVVGGVLGTAGGWFGHQSQTPNLDSTQTAFFNVPAATRGAGDCTPLRLAPDTRFALLRVPGVSRDRQVMAADAEKRELPASRYTSRLQPDGSHLVRIDAQALDGREVFLEAHAADGFGEPLGCVTGQVASGR
Ga0348332_122511244	F022024	N/A	DATKVDPARLIRALEYATRMGARILSFSAHWSVTTPELDAAFREIADQPGSPVAALVVASVPNKGEPAAGYPAAYDFRRIVRAIPIGNDDQISPGTSPAPPGLNLGAPSACVIGAGRPPAQYRLEQGSSNSTAILAGLLAGIWSSPRYDKLSPDEFLAGVVEGRMSKTARHSKPGSRPPYLEGVPLADACLLATERRSASVCRQPEAHREARP

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