Basic Information | |
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Taxon OID | 3300032462 Open in IMG/M |
Scaffold ID | Ga0335396_10259708 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1136 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020325 | Metagenome / Metatranscriptome | 224 | Y |
F053834 | Metagenome | 140 | Y |
F057145 | Metagenome | 136 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335396_102597082 | F057145 | GGA | LGCRMSANTRLLRTAAESALDALELISFTEGFEAATNALDELSDIKHNFDEKQVAEILRWAAKELRGENVN |
Ga0335396_102597083 | F020325 | AGG | MLIRNWSDLKYEVADKLFGKELDEAYKDGISIGAEYATRKLSFEVSLKNHLTLTKVESRGYDHALAAIVRAKDEIRKTTGASV |
Ga0335396_102597085 | F053834 | GAGG | MIDMADMSDKLYWTKGCEAGVELERNRIHKAIYDYFRLFDGASTRTHKISEVELITLIREAQDD |
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