Scaffold Ga0335396_10259708

Overview

Basic Information

• Taxon OID: 3300032462
• Scaffold ID: Ga0335396_10259708
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020325	Metagenome / Metatranscriptome	224	Y
F053834	Metagenome	140	Y
F057145	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335396_102597082	F057145	GGA	LGCRMSANTRLLRTAAESALDALELISFTEGFEAATNALDELSDIKHNFDEKQVAEILRWAAKELRGENVN
Ga0335396_102597083	F020325	AGG	MLIRNWSDLKYEVADKLFGKELDEAYKDGISIGAEYATRKLSFEVSLKNHLTLTKVESRGYDHALAAIVRAKDEIRKTTGASV
Ga0335396_102597085	F053834	GAGG	MIDMADMSDKLYWTKGCEAGVELERNRIHKAIYDYFRLFDGASTRTHKISEVELITLIREAQDD