NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335398_10165616

Scaffold Ga0335398_10165616


Overview

Basic Information
Taxon OID3300032435 Open in IMG/M
Scaffold IDGa0335398_10165616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2078
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000291Metagenome / Metatranscriptome1361Y
F000836Metagenome / Metatranscriptome868Y

Sequences

Protein IDFamilyRBSSequence
Ga0335398_101656161F000291GAGVLVYARTHTQTTWVLHVSPGVGWPGTPGEPEEPRWTKAQYTCRPYRCTKYMCLYICWAVIFDDLG
Ga0335398_101656162F000836N/AMYVYVYVYVCVYVFIHVYIHARVGVHMHLCRRILFICTVQSLCYMRVYHRCFVTPACVCMGGLKVGGFPACSWLALVAGVEGYIFAGVEIGGLSCIFLYFCGC

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