Scaffold Ga0335398_10024723

Overview

Basic Information

• Taxon OID: 3300032435
• Scaffold ID: Ga0335398_10024723
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6306
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. TMED19 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039489	Metagenome	163	Y
F080920	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_100247235	F039489	AGGA	MDTIKTKGSTMPLLSIFLCAKLKQWGVLNEVKCRLCEKYYEEKNIRDPPDTVESAGHIQCYCPVLQLPRIAIHHGIWRELMFSIRNSSTELMDASKPRWHFPSALSPEAHAKWGLYKILEYMGLHEILPPGAVHNRVRLRKDIEEYHIAYAIDFDDTDIDTFIARRPDGLAFDKDKKIMCILGIHQSHGHE
Ga0335398_100247239	F080920	AGAAG	MNLALMHRQCPICNKKKGNCHFPTQLHLKPPCLDCKYAWKPADIKYNGTALKVTHGKTPIRLLGIRYNMWLDSTAQRTYVMDGITEMACFLRKNRDLSIENGLRLIDCTLSPPLAFSGPVIIWPEIEFRKLTAAFVRCNKEAWQLSPNTSTALFTFPKDLGGLQIKLPRAILCSATWGHLTRCCQFDDGTRQLAEITYKDALEKLGCLDMEDLQFEAEFLTWDQASQNSFTFACHLTSTIGIRVSWD